PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2051
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 322aa    MW: 36002.1 Da    PI: 7.8725
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2051genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-32185241158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  dep+YVN+KQy++Il+RRq Rakle+++kl  ksrkpylheSRh+hAl+R RgsgGrF
  Gh_D13G2051 185 DEPIYVNPKQYHGILRRRQYRAKLEAQNKL-VKSRKPYLHESRHRHALNRVRGSGGRF 241
                  79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-36183244IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.017184244IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-27186241IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23187209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23218241IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAVRVQNFPK KTFDESSVRS LSHLSVSCTP WWSLNEQQIE EPLPHNVSLK VETPSQLYHQ  60
TKHLDLQLPD QELTTVQAIG RTHCEVGAIG ATSSQCDPSE SGPDESCEKD TEGQVKPVFL  120
VNNPNTLFSP SHQNYNHSMA WTQYPYANAY FNGMFTPYGP QAIIHTQLGG NAPTRIPLPL  180
DLAEDEPIYV NPKQYHGILR RRQYRAKLEA QNKLVKSRKP YLHESRHRHA LNRVRGSGGR  240
FLSKKTLQQP NDNCTNRTNS RSELESLCSR MAGYGGPNTS CMNISSVSDN DGNFQWLEHG  300
FADISRAGST GDGMRHGASV VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21185251268NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.71221e-150boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719417.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_016719418.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_016719420.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_016719421.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_016719422.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_016719423.10.0PREDICTED: nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBLA0A1U8M1990.0A0A1U8M199_GOSHI; nuclear transcription factor Y subunit A-4-like isoform X1
STRINGGorai.013G226200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-42nuclear factor Y, subunit A3