PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2119
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 527aa    MW: 60409.4 Da    PI: 7.6855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2119genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-0690111527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C f++  G+C+ GdrC+F Hgp
  Gh_D13G2119  90 PCYFYFN-GFCNKGDRCSFLHGP 111
                  7999999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.221635IPR000571Zinc finger, CCCH-type
PfamPF156633.1E-11765No hitNo description
SMARTSM003560.058734IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7793763IPR000571Zinc finger, CCCH-type
SMARTSM003560.933962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.33385112IPR000571Zinc finger, CCCH-type
SMARTSM003560.00686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-690113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEEQLLKRNT DCVYFLASPF TCKKGLDCEY RHSEVARLNP RDCWYWLAGN CINPTCGFRH  60
PPLDVHSQVP SESAALPYQC STAANKTNLP CYFYFNGFCN KGDRCSFLHG PDESTITVNS  120
LKTGALPLDH KTFVENDVGA VQTETHPNPS KTAPNSIKDT VVQLKTDLQE PVPKTMIKRS  180
VSPKTSVFEL EQAGFVSSQS LLLKEGITQT GSPICTDESL EEQLDDPFEP EEPEERWESS  240
EGFDVLVDNK SEDLDYGNDS EYQKDPEEEQ TDYFFSYDYE DSVQHETRYP DLEFSYDRDA  300
YDAYEGSDNE YIFNNPRNPF AHPGDKRRLD SMFSQKRRRL LPVKRSIDVD LRDYLSKRRV  360
VKGNPLKCLS RSDYSHLISR SLERPRRRSM GRKLSGRLAS KVGKHYIEST GGQGGFRNGT  420
NRHGWLKHLE PNRSIRRPYR EKRLPRRKSV SSEVSRNLIS RERKYEDAPT AFTGPKTLAQ  480
IREEKRKTEE NGGKMRHSIV TASADFQGPK PLSEILKDKE RLAKKGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325338KRRLDSMFSQKRRR
2335339KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.23890.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731627.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A1U8MXR40.0A0A1U8MXR4_GOSHI; zinc finger CCCH domain-containing protein 34-like
STRINGGorai.013G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710