PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2173
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 776aa    MW: 84463.5 Da    PI: 6.2126
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2173genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.11.1e-15366404341
          TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  +k+CnCkkskClk+YC+Cfaag +C+e C+C++C+N+ e
  Gh_D13G2173 366 CKRCNCKKSKCLKLYCDCFAAGIYCAEPCSCQGCFNRPE 404
                  89**********************************876 PP
2TCR48.12.2e-15452490139
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                  ++k+gCnCk+s ClkkYCeC++a++ Cs  C+Ce+CkN 
  Gh_D13G2173 452 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 490
                  589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-17364405IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.042365492IPR005172CRC domain
PfamPF036381.3E-11367402IPR005172CRC domain
SMARTSM011143.8E-17452493IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.2E-11454489IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MDSPEPTKSP IPSSSAAPSS SFSPVQESPF SNFVSNLSPI KHDKVPHVAP RFLGLSSPPL  60
VFTSPRINTL KRPQSSNVEV SQNVKGDKQS TNRPGDLERS VSELHREMIV DVKEDDTKDS  120
MSVQPSSSSG CVDEYLADPV EADCVNSAYS KGVEDDGYGC DGFLQLQPGS LQMVQPYEGF  180
AENVGGVTDA PFYDTTHDLA AIEHLRGMSR RCLQFGEPQP EPTANCSSSP NLVNDVITSV  240
PLATSSKTED QGGTVSMKLA VDSMGTEGIK SASITSCQSM ENMENCSDAF EKVSTAPQDR  300
TLEAKVSTIE GSAASESLCT MESIECHMTV NTKRKLSSGD GDINKVFNPQ SPKNKRKKLS  360
ESDEGCKRCN CKKSKCLKLY CDCFAAGIYC AEPCSCQGCF NRPEYESTVL ETRQQIESRN  420
PLAFAPKIVQ PVTEVPVNSR EDGNWKTPSS ARHKRGCNCK RSMCLKKYCE CYQANVGCSI  480
GCRCEGCKNV YGKKEDYYVT EAIVKRGVGE LSESTVAVKK DFLHSELCNP HYLTPTTPSF  540
EHSDHGKNAS VSGLLPMRCL PSPESDPTNV SLAKSPRTSN TNDILLETSK ENLYVGSYHD  600
KVNYNNADNI LADDCHQTPL PNHPSIIIDS SSSKPRELTN LSRLNLGPRS GCFTLGGSLR  660
WRSSPITPKS PIDKELQQLD SDGGLYDILE DDTPEMLKDT STPLKSVKAS SPNGKRVSPP  720
HKLHQLGSSS SGSLRSGRKF LLKAVPSFPP LTPCIVSKGN SNESRSYYEE DGSKDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1836949014121Protein lin-54 homolog
5fd3_B3e-1836949014121Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725547.10.0PREDICTED: CRC domain-containing protein TSO1-like
TrEMBLA0A1U8MFC50.0A0A1U8MFC5_GOSHI; CRC domain-containing protein TSO1-like
STRINGGorai.013G241500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.15e-63Tesmin/TSO1-like CXC domain-containing protein