PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2252
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 363aa    MW: 40835.5 Da    PI: 9.5183
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2252genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3383.43.3e-117382951265
                  XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
         EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 
                  +el++rmwkd ++l+r+ker++     +    +a++ n+++e arrkk+sraQDgiLk Ml  mev+na+GfvYgi+pekgk v+gasd+LraWWkek
  Gh_D13G2252  38 DELERRMWKDSVRLRRIKERERVAA--Q----QAAELNQTSELARRKKISRAQDGILKNMLMLMEVYNARGFVYGIVPEKGKAVSGASDNLRAWWKEK 129
                  79******************99743..3....3456789*********************************************************** PP

                  XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS
         EIN3  99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196
                  v+fd+ngpaai+ky+a++l++s ++++  ++ +  +sl++lqD+t+gSLLs+lmqhcdppqr++plek ++pPWWPtG+e+ww +lgl++  + ppyk
  Gh_D13G2252 130 VNFDKNGPAAIVKYEAECLAMSVSDRN--RNGNPCSSLQDLQDATIGSLLSTLMQHCDPPQRKYPLEKRIPPPWWPTGNEDWWVKLGLQRGDS-PPYK 224
                  *********************988877..6789999*****************************************************9998.9*** PP

                  -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS
         EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265
                  kphdlkk+wkv+vLtavikhmsp+i++i+++++qsk+lq k +akes+++l vl++ee++++t s    s+
  Gh_D13G2252 225 KPHDLKKMWKVGVLTAVIKHMSPDIAKIQRHVLQSKCLQGKLTAKESAIWLGVLGREEALIRTSSITeiSR 295
                  *************************************************************9988775444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.9E-11438282No hitNo description
Gene3DG3DSA:1.10.3180.108.0E-67161288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.67E-59164285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAKLDDTGGD ISWDIEVSEL RRDNMGEEDV SDEEIRADEL ERRMWKDSVR LRRIKERERV  60
AAQQAAELNQ TSELARRKKI SRAQDGILKN MLMLMEVYNA RGFVYGIVPE KGKAVSGASD  120
NLRAWWKEKV NFDKNGPAAI VKYEAECLAM SVSDRNRNGN PCSSLQDLQD ATIGSLLSTL  180
MQHCDPPQRK YPLEKRIPPP WWPTGNEDWW VKLGLQRGDS PPYKKPHDLK KMWKVGVLTA  240
VIKHMSPDIA KIQRHVLQSK CLQGKLTAKE SAIWLGVLGR EEALIRTSSI TEISRGGHAD  300
SNDVVGDQIG SVSSKIGGRN QLTDAEPVAL IGNDDAPLVQ EDVPVEKQSR RKRPRLRSSR  360
GGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A4e-7116528812135ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350356RKRPRLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234730.0boll
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016734733.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
SwissprotO231161e-145EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A1U8NA160.0A0A1U8NA16_GOSHI; ETHYLENE INSENSITIVE 3-like 3 protein isoform X1
STRINGGorai.013G250300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-145ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]