PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D13G2382
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 248aa    MW: 27087 Da    PI: 8.613
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D13G2382genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-201776357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++tkeq+  Le+l+++  r+psa+++++++++l     ++ ++V++WFqN++a++++
  Gh_D13G2382 17 SRWNPTKEQISMLESLYKQgIRTPSADQIQQITSRLkaygTIEGKNVFYWFQNHKARQRQ 76
                 7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-371678365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi +Le+lyk+G+rtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
        Gh_D13G2382 16 NSRWNPTKEQISMLESLYKQGIRTPSADQIQQITSRLKAYGTIEGKNVFYWFQNHKARQRQKQ 78
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8351277IPR001356Homeobox domain
SuperFamilySSF466893.25E-131283IPR009057Homeodomain-like
SMARTSM003892.7E-61481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-81776IPR009057Homeodomain-like
PfamPF000464.9E-181776IPR001356Homeobox domain
CDDcd000866.74E-71878No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEGGGGGGGG GGGGGNSRWN PTKEQISMLE SLYKQGIRTP SADQIQQITS RLKAYGTIEG  60
KNVFYWFQNH KARQRQKQKQ ENLAYINRYI HHHHRAQPVF HPPPCTNVVC AGPYFVPQAD  120
HHHHLGFYPQ CPKVLLPSGS IKRRGRPIGK TGKALFYNGN AYDHTMVPSP DTENLNNGAF  180
NNGGGATNHH ETLPLFPLHP TGVSEETLMA SSSPTGSTSC ETTISAGGVD NHESNNEGSG  240
EHRFIDFF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5837212e-71JX583721.1 Gossypium hirsutum clone NBRI_GE16841 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739229.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1U8NMR80.0A0A1U8NMR8_GOSHI; WUSCHEL-related homeobox 2-like
STRINGGorai.013G264200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-58WUSCHEL related homeobox 2