PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D13G2419

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 196aa MW: 21131.7 Da PI: 9.2517

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D13G2419	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.3	1.1e-33	35	110	3	78
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaess 78 kk++++++h+kv+gRdRR+Rl+ caar+F+L++eLG+++d++ti WLl+qa+p+i ++tgt+ s s + ++ Gh_D13G2419 35 NKKTTTKDRHAKVDGRDRRIRLPTVCAARIFQLTRELGLKTDGETIAWLLRQAEPSITAATGTGVSETSTTpgP--TN 110 59*************************************************************66666555431..11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-27	38	114	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.648	40	94	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MASSKNMGLE MALSTNPSTK KPRTGSANKA STSKNKKTTT KDRHAKVDGR DRRIRLPTVC 60 AARIFQLTRE LGLKTDGETI AWLLRQAEPS ITAATGTGVS ETSTTPGPTN NNSTNTGLVP 120 FSTGSDSPLA TSDYTPCLTF LQEPDRMLLK NSGDVSRGEP RLPPLEFDFD LEFSAHEMAM 180 FQSVAAAANH DKEGKI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269\|PubMed:19286557}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012461704.1	1e-142	PREDICTED: transcription factor PCF1-like
Swissprot	Q9FTA2	3e-30	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0D2SJY4	1e-140	A0A0D2SJY4_GOSRA; Uncharacterized protein
STRING	Gorai.013G268200.1	1e-141	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-29	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]