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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_D13G2510 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 310aa MW: 34774.6 Da PI: 9.9394 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D13G2510 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 335 | 2e-102 | 35 | 310 | 16 | 301 |
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqq 113
++++l +++++ms++aerda+i+ern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +e + ++ p+g+++ +g ++++ + +
Gh_D13G2510 35 QSNALV--MNKKIMSILAERDAAIQERNIAISERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRESA--KNFPFGSGIQRGRTCMHPSYH 128
335555..99*************************************************************9887..78899****9*9999994433 PP
GAGA_bind 114 lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvP 211
+ +d++ + +e++ ++alp+++ ++ + ++ +k+++ ++ +k +k kk e+ +++v++e ++ k+e++s ++l +++De+++ vP
Gh_D13G2510 129 ---SSDTDETLN-HEMHVTNALPVSTIPSAEGKSCPVKRTKVNRAVSSKSPRKIKKVAEDLNRQVDTEV--RKCKSEWNSEHIGLSLINFDETKISVP 220
...333444444.79*************999999999988888888889999****9********9999..57************************* PP
GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
vCsCtG++r CYkWGnGGWqS+CCtt+iS yPLP+++++r+aR++grKmS+++f+klL++LaaeGyd+s+p+DLk++WA+HGtn+++ti+
Gh_D13G2510 221 VCSCTGVPRHCYKWGNGGWQSSCCTTSISSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGYDVSKPLDLKTYWARHGTNRYITIK 310
*****************************************************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MDGAGQLENG RYKLDRYKGA HPPWNMMPQH HVKEQSNALV MNKKIMSILA ERDAAIQERN 60
IAISERKEAL AARDEALQQR DKALAERDSA LIERDNALAV LQCRESAKNF PFGSGIQRGR 120
TCMHPSYHSS DTDETLNHEM HVTNALPVST IPSAEGKSCP VKRTKVNRAV SSKSPRKIKK 180
VAEDLNRQVD TEVRKCKSEW NSEHIGLSLI NFDETKISVP VCSCTGVPRH CYKWGNGGWQ 240
SSCCTTSISS YPLPQMPNKR HARVGGRKMS GSVFTKLLSR LAAEGYDVSK PLDLKTYWAR 300
HGTNRYITIK
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
