PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca004822G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 295aa MW: 32647 Da PI: 7.3505

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca004822G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.7	2.4e-08	37	81	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC C +H+ H +vp+ Gh_Sca004822G01 37 LMCDVCEQVPAAFTCKADAAALCVACDADIHSAnhlarrHYRVPI 81 58****************************955766667777765 PP
2	CCT	65.8	1.2e-22	217	261	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R a++lRY+eKrk+RkFeK++rY+sRKa+AesRpR+KGrFvk+++ Gh_Sca004822G01 217 RVARVLRYREKRKKRKFEKTVRYASRKAYAESRPRIKGRFVKRTQ 261 89****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	3.5E-13	34	81	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.324	34	81	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.1E-6	37	81	IPR000315	B-box-type zinc finger
CDD	cd00021	3.56E-8	38	81	No hit	No description
PROSITE profile	PS51017	16.38	217	259	IPR010402	CCT domain
Pfam	PF06203	7.6E-17	217	259	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAAKHSDACK PTATDPDFMC LSYDSSTAIH GCIGRVLMCD VCEQVPAAFT CKADAAALCV 60 ACDADIHSAN HLARRHYRVP IDPFLGPQKE DVVVMGSWSL LPGFNHKLVE TEDLGISEMD 120 PFIDLEYQDG YHVLQHHNLG MESLVPVQIE PATTVPVVNP IHFCQSQSLS HSVSSSSVEL 180 GDGNSLSDIS CPLRGTTTDP SILICNNQVD QVGSMDRVAR VLRYREKRKK RKFEKTVRYA 240 SRKAYAESRP RIKGRFVKRT QIHNRVDHLC NSATSPSSST TTSHTHYYGI VPSFL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.25613	0.0	ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM201962	0.0	KM201962.1 Gossypium hirsutum cultivar acc. TM-1 CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201964	0.0	KM201964.1 Gossypium hirsutum cultivar ZMS12 CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201966	0.0	KM201966.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201968	0.0	KM201968.1 Gossypium hirsutum cultivar JM CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201970	0.0	KM201970.1 Gossypium hirsutum var. punctatum CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201972	0.0	KM201972.1 Gossypium hirsutum cultivar Morrilli CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201974	0.0	KM201974.1 Gossypium hirsutum cultivar yucatanense CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201978	0.0	KM201978.1 Gossypium hirsutum var. marie-galante CONSTANS-like 8 protein gene, complete cds.
GenBank	KM201982	0.0	KM201982.1 Gossypium hirsutum f. palmeri CONSTANS-like 8 protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603704.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5
Swissprot	Q9FHH8	1e-58	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A0D3R2H9	0.0	A0A0D3R2H9_GOSHI; CONSTANS-like 8 protein
TrEMBL	A0A0D3R2J2	0.0	A0A0D3R2J2_GOSHI; CONSTANS-like 8 protein
TrEMBL	A0A0D3R301	0.0	A0A0D3R301_GOSHI; CONSTANS-like 8 protein
TrEMBL	A0A0D3R353	0.0	A0A0D3R353_GOSHI; CONSTANS-like 8 protein
STRING	Gorai.013G246000.1	1e-179	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24331	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	6e-29	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518] Zhang R, et al. Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species. PLoS ONE, 2015. 10(2): p. e0118669 [PMID:25710777]