PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca004863G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 280aa MW: 31943.3 Da PI: 8.6964

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca004863G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.9	2.3e-28	55	104	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ Gh_Sca004863G01 55 PRLRWTPELHLSFVRAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 104 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-26	51	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.679	51	111	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-13	53	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-19	55	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	56	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLMKKNPLNL YDEDEEGDDG TKARDGASSS NSIVEECEKK ASPNGVRHYV RSKMPRLRWT 60 PELHLSFVRA VERLGGQERA TPKLVLQLMN IKGLSIAHVK SHLQSTLHDH QRVIRYRLIK 120 QPEYICFNFN TDLAFGSFVS LLTISDINIY SDISWSGFCG NRTPEPYLTN FINSRRKACS 180 NPRSEILYNM NNNFIFSQQP VNEMVHDCES NGAQIQPMLM YMHPSFANKW PGKGAERQGM 240 SKRKPLDEDL DLSLSLSTKL RRKTSNEEEV ANSNLSLSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	56	117	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687254.1	1e-170	PREDICTED: putative two-component response regulator ARR20
TrEMBL	A0A1U8JG56	1e-169	A0A1U8JG56_GOSHI; putative two-component response regulator ARR20
STRING	Gorai.004G233300.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-35	G2-like family protein