PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca004866G03
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 232aa    MW: 25961.4 Da    PI: 5.4915
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca004866G03genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF688.8e-222770245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     + en+s rqvtfskRr+g++KKA EL++LC+ ++ +i+fs++gk
  Gh_Sca004866G03 27 KLENESSRQVTFSKRRTGLFKKAIELCILCGCNIGIIVFSPKGK 70
                     679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.3851878IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-301877IPR002100Transcription factor, MADS-box
CDDcd002656.69E-361995No hitNo description
SuperFamilySSF554552.49E-271993IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-202040IPR002100Transcription factor, MADS-box
PfamPF003191.8E-222873IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-204055IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-205576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MASLNQTRSS NTTTKATRGR QKIPIKKLEN ESSRQVTFSK RRTGLFKKAI ELCILCGCNI  60
GIIVFSPKGK RFCFGHPDID TILERYLSKN PNHDDGLMMS GDDIAPCLEE FNKEIRETLE  120
KLEEEKKRSK EIQKEKEERK TKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRASA  180
LMEDVFAMST AMTVANPDGM GNSFAIQNSG FAVGETGGVE GFNFGDGHDS PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A8e-1819108187Myocyte-specific enhancer factor 2A
3kov_B8e-1819108187Myocyte-specific enhancer factor 2A
3kov_I8e-1819108187Myocyte-specific enhancer factor 2A
3kov_J8e-1819108187Myocyte-specific enhancer factor 2A
3p57_A8e-1819108187Myocyte-specific enhancer factor 2A
3p57_B8e-1819108187Myocyte-specific enhancer factor 2A
3p57_C8e-1819108187Myocyte-specific enhancer factor 2A
3p57_D8e-1819108187Myocyte-specific enhancer factor 2A
3p57_I8e-1819108187Myocyte-specific enhancer factor 2A
3p57_J8e-1819108187Myocyte-specific enhancer factor 2A
5f28_A9e-1819108288MEF2C
5f28_B9e-1819108288MEF2C
5f28_C9e-1819108288MEF2C
5f28_D9e-1819108288MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636077.11e-152PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1U8N4181e-145A0A1U8N418_GOSHI; agamous-like MADS-box protein AGL61
STRINGGorai.012G163200.11e-140(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22AGAMOUS-like 61