PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca004963G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 221aa MW: 25595.6 Da PI: 8.7405

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca004963G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.5	1.7e-26	56	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka++++k +k+gkw++t++ +eHnH+l+ Gh_Sca004963G01 56 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFNKSGKWVITRFIKEHNHPLV 144 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-24	56	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MNNVPCLCVA VDLDEGVEAI ERFTRGEILA VPCEADLIVE PHEGMEFESE DAAKIFYDEY 60 ARRVGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI 120 HIKFNKSGKW VITRFIKEHN HPLVVAPREA RQTMDEKDKK IQELTVELRN KKRLCAAYQE 180 QLTAFMKIVE EHSNQLSKKV QNVVNNLKEY ESIEPQLLQQ R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23408	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691045.1	1e-159	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2P5WVF7	1e-162	A0A2P5WVF7_GOSBA; Uncharacterized protein
STRING	Gorai.005G128700.1	1e-150	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-115	FAR1 family protein