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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_Sca005019G01 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 76aa MW: 8479.99 Da PI: 8.8782 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 27.6 | 3.9e-09 | 55 | 72 | 8 | 25 |
HHHHHHHHHHHHHHHHHH CS
SRF-TF 8 nrqvtfskRrngilKKAe 25
+ +vtfskRrng+lKKA+
Gh_Sca005019G01 55 QGKVTFSKRRNGLLKKAY 72
568**************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:3.40.50.720 | 4.3E-10 | 4 | 64 | IPR016040 | NAD(P)-binding domain |
| SuperFamily | SSF51735 | 4.12E-7 | 4 | 61 | IPR016040 | NAD(P)-binding domain |
| SuperFamily | SSF55455 | 1.16E-5 | 56 | 73 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 9.068 | 57 | 73 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.0E-6 | 57 | 73 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 76 aa Download sequence Send to blast |
MACVDVILDC IGAAYLQRNL VYLNVDGRLF IIGSITEFVA ELNIAAMFEK RFSIQGKVTF 60 SKRRNGLLKK AYDGCS |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012443307.1 | 2e-22 | PREDICTED: quinone oxidoreductase PIG3-like | ||||
| TrEMBL | A0A0D2TXM0 | 2e-47 | A0A0D2TXM0_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.009G358500.1 | 4e-48 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM25045 | 2 | 3 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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