PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca005564G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 312aa    MW: 34960.4 Da    PI: 8.2443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca005564G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33158215259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+ +C+vkk+ver+ +dp++v++tYeg+H+h+
  Gh_Sca005564G01 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTISCNVKKRVERCFSDPSIVVTTYEGQHTHP 215
                      8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.4E-1091312IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.809.0E-35142217IPR003657WRKY domain
SuperFamilySSF1182901.57E-29149217IPR003657WRKY domain
PROSITE profilePS5081131.238152217IPR003657WRKY domain
SMARTSM007741.2E-39157216IPR003657WRKY domain
PfamPF031065.9E-26158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERKEGVKVE DVLGNSSCSV NDFPLQSIFD LSSNEEEKIR SLGFMDLLGV QDLISSPLLE  60
IMAAQQVPSR MATQPPNAFS STKIGPPHEV FNQPATPNSS TISSASSEAV HDEPAKLDDQ  120
EEDQRKTKKQ LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY  180
YRCTTISCNV KKRVERCFSD PSIVVTTYEG QHTHPSPVMP RPNLVGSHLN SAISAASFGM  240
SMQTTPSHYH QHFQQPFTDN LSPLNFGHNG SLNATFLHQK RFCTPGPGPG PSLLKDHGLL  300
QDILPSHMLK EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-261502171077Probable WRKY transcription factor 4
2lex_A1e-261502171077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5518450.0KJ551845.1 Gossypium hirsutum WRKY transcription factor 68 (WRKY68) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016695902.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229005e-67WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1U8K0610.0A0A1U8K061_GOSHI; WRKY transcription factor
STRINGGorai.007G121200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-59WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]