PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca006457G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 601aa    MW: 67828.1 Da    PI: 5.719
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca006457G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3432.93.1e-132383971334
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      +el++r wkd+++l+r+ker+k     + +a++++ks++ ++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++r+W
  Gh_Sca006457G01  38 DELERRIWKDRIKLRRIKEREKIA---ALQAVEKQKSKQASDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIRSW 128
                      79******************9974...45669************************************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--T CS
             EIN3  95 WkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglsk 188
                      Wkekv+fd+ngpaai+ky+a++l+ s++++   ++ +++ sl++lqD+tlgSLLs+lmqhc+ppqr++plekgv+pPWWPtG+e+ww +lgl++
  Gh_Sca006457G01 129 WKEKVKFDKNGPAAIAKYDAECLAISESDNI--KNGNSQCSLQDLQDATLGSLLSSLMQHCKPPQRKYPLEKGVPPPWWPTGNEEWWVKLGLQQ 220
                      **************************77666..89*********************************************************** PP

                      T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX...XX......XXXXXXXX CS
             EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah...ss......slrkqspk 273
                       q+ ppykkphdlkk+wkv+vLtavikhmsp+i++ir+++ qsk+lqdkm+akes+++l vl++ee+++++ s +   ss        r+++++
  Gh_Sca006457G01 221 GQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDIAKIRRHVHQSKCLQDKMTAKESAVWLGVLGREEALIQQPSCDkgiSSitekpqGGRDGKKQ 313
                      **9.9*******************************************************************9996653366666656669999 PP

                      XXXXXXXXXXXXXXXXXX.XXXXXXXXXX.......................XXXXXXXXXXXXXXXXXXXXX......XXXXX CS
             EIN3 274 vtlsceqkedvegkkeskikhvqavktta.......................gfpvvrkrkkkpsesakvsskevsrtcqssqf 334
                        +s ++++dv+g ++ + + ++++++++                        ++ + +rk+++++ +    ++v ++ +++ +
  Gh_Sca006457G01 314 PAVSIDSDYDVDGVDDGRGSVSSKEDRRDqpidvepiayinnddshpvqenePVEKQPRRKRPRKRTNHGDRQNVPSHVDKQLV 397
                      99999999****887777777777777667999999999999999999986655566667766666666666666666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.7E-12538285No hitNo description
Gene3DG3DSA:1.10.3180.102.8E-70161292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.75E-61166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MAEFEEIGAD ISSDLEVDDI RCENIAEKDV SDEEIEADEL ERRIWKDRIK LRRIKEREKI  60
AALQAVEKQK SKQASDQARR KKMSRAQDGI LKYMLKLMEV CKARGFVYGI IPEKGKPVSG  120
ASDNIRSWWK EKVKFDKNGP AAIAKYDAEC LAISESDNIK NGNSQCSLQD LQDATLGSLL  180
SSLMQHCKPP QRKYPLEKGV PPPWWPTGNE EWWVKLGLQQ GQSPPYKKPH DLKKMWKVGV  240
LTAVIKHMSP DIAKIRRHVH QSKCLQDKMT AKESAVWLGV LGREEALIQQ PSCDKGISSI  300
TEKPQGGRDG KKQPAVSIDS DYDVDGVDDG RGSVSSKEDR RDQPIDVEPI AYINNDDSHP  360
VQENEPVEKQ PRRKRPRKRT NHGDRQNVPS HVDKQLVPSP DEHVNAELRS PVPDINQTDA  420
SFPEYNMPAT QQENDASTML MHGEKHLIVQ SELPAIPCAN EIFTQSMHVD GRPMLYPSVQ  480
QTELHHRAAY EFYNPSVEFR HCRDGQQIQM GMNVPQIGPE NGIDVSVPAG NDHVITGGEL  540
HHYMKDPFHD EQDRAVHNPF GSPTSDPSFY GGFNSPFELP FDGTSSLEEL LDDDLIQYFG  600
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-731652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371377RRKRPRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016689290.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A1U8JG860.0A0A1U8JG86_GOSHI; ETHYLENE INSENSITIVE 3-like 3 protein
STRINGGorai.009G071400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-174ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]