PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca008688G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 254aa    MW: 28496.4 Da    PI: 6.51
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca008688G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-124188455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h   Er RR+++++ f+ L  llP++      K +K++++ +Av YIk+Lq
  Gh_Sca008688G01 41 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTVVDEAVTYIKNLQ 88
                     67778*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-153798IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.8843787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-134092No hitNo description
Gene3DG3DSA:4.10.280.101.7E-144099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-94188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-84593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00241177211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MELEKVSVAE VGEKRSRKGG LKQGKANGGV DHGADQSEHE MHIWTERERR KKMRNMFSSL  60
HALLPQLPAK ADKSTVVDEA VTYIKNLQQT LKTLEKQKLE KLKNSATVDY EQSSIITSQV  120
QPPESREAFF TDNQGPTNNY PMTIDMSQTF PAQASPACFQ TWFSSNVVIS MCGDDAQINV  180
CSPRKPGTFA TILYILEKHQ LEVVSAHIFS DQYRTMYMIH VHAGGASEQF PELLSIEETF  240
KLAAGEMNLC LFSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730073.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1U8MX200.0A0A1U8MX20_GOSHI; transcription factor bHLH95-like
STRINGGorai.002G135000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-40bHLH family protein