PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca011646G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 107aa MW: 11727.1 Da PI: 8.067

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca011646G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.4e-08	32	53	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f+ tG+C+y d+Ck+ H+ Gh_Sca011646G01 32 VCNRFLNTGFCQYEDNCKYFHP 53 5******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.15	27	55	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-8	28	58	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-7	32	60	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-5	32	53	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
GLQHIRAKAQ WFHSQNAQDL YQTSVPPFSK GVCNRFLNTG FCQYEDNCKY FHPNNDSRTP 60 NPPLSTAPAG GVVGNGNGMA ISWGNLPPSL KPPPENGYPP LPFVDWG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX590223	1e-46	JX590223.1 Gossypium hirsutum clone NBRI_GE25093 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012463158.1	8e-70	PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBL	A0A0D2TUE7	2e-68	A0A0D2TUE7_GOSRA; Uncharacterized protein
STRING	Gorai.013G032200.1	3e-69	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10474	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-25	C3H family protein