PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca026339G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 225aa MW: 23631.9 Da PI: 8.5216

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca026339G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.1	2.6e-37	67	166	1	103
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 aa+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + + + s +a+++ Gh_Sca026339G01 67 AAPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTS--NANPE 156 689**************************************************************7777744421..1111111111..11111 PP TCP 94 aakskksqks 103 ++k++++ Gh_Sca026339G01 157 PGDPSKKKHK 166 1111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.7E-30	73	163	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.421	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MAAIHKLEVE EDADPRAVVL SINGGGDVAP SKNPKEEPDI DTTLGAMPTA VHVPSGVPVP 60 PVTAAPAAPK RASTKDRHTK VEGRGRRIRI PATCAARIFQ LTRELGHKSD GETIRWLLEH 120 AEPAIIAATG TGTVPAIAMS VNGTLKIPTT SNANPEPGDP SKKKHKRPAN SEYVDINDAV 180 SVSSGLAPVV TPQQQQQQQA AVLPQGLVPI WAIPSNTVVP GAFFM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2867	0.0	embryo\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269\|PubMed:25527103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695435.1	1e-163	PREDICTED: transcription factor TCP9
Swissprot	O64647	4e-83	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A1U8JYW8	1e-162	A0A1U8JYW8_GOSHI; transcription factor TCP9
STRING	Gorai.007G094200.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-72	TCP family protein