PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca031344G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 111aa    MW: 12639.1 Da    PI: 10.3442
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca031344G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.83.3e-1266106338
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....T CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....g 38 
                      +R+++t+eql++Leel+++ +r+psa+++++++++l    +
  Gh_Sca031344G01  66 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygK 106
                      7*****************99***************955555 PP
2Wus_type_Homeobox72.56.6e-2465111349
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 
                        ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kN
    Gh_Sca031344G01  65 SSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKN 111
                        79********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000467.8E-1066106IPR001356Homeobox domain
SuperFamilySSF466894.79E-566102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGYNDGGAEF NMPDSFNGRK LRPLIPRPNN NSPCLSRING SDFFALSMGD QNKREFNTQP  60
AVVVSSRWNP TPEQLRTLEE LYRRGTRTPS ADQIQHITAQ LRRYGKIEGK N
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440326.16e-76PREDICTED: WUSCHEL-related homeobox 1
RefseqXP_016718227.15e-76PREDICTED: WUSCHEL-related homeobox 1-like
RefseqXP_016718228.13e-78PREDICTED: WUSCHEL-related homeobox 1-like
RefseqXP_017637018.15e-76PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_017637019.15e-76PREDICTED: WUSCHEL-related homeobox 1-like isoform X2
RefseqXP_017637024.15e-76PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_017637025.15e-76PREDICTED: WUSCHEL-related homeobox 1-like isoform X2
SwissprotQ6X7K04e-36WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A1U8LUM11e-74A0A1U8LUM1_GOSHI; WUSCHEL-related homeobox 1-like
TrEMBLA0A1U8LXU46e-77A0A1U8LXU4_GOSHI; WUSCHEL-related homeobox 1-like
TrEMBLA0A2P5X8Q39e-75A0A2P5X8Q3_GOSBA; Uncharacterized protein
STRINGGorai.008G289800.12e-75(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-38WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]