PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca033106G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BES1
Protein Properties Length: 110aa    MW: 11806.1 Da    PI: 4.7872
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca033106G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF82273.95.1e-2319547134
           DUF822  47 nneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspssldsislasa...... 133
                      +n+Vl+AL+reAGw+ve+DGttyr++  p+ ++++ g+++ +s es+l+ +slk++++++ ++ ++++ + + ++sp+slds+ +a+       
  Gh_Sca033106G01   1 MNDVLAALAREAGWTVEPDGTTYRHSPPPQ-HQQHLGAFSVRSGESPLSaTSLKNCSVKATLDCQQPVVRIDGSLSPASLDSVVIAERdtrsek 93 
                      7***********************665555.******************99**********************************988655333 PP

           DUF822 134 .a 134
                        
  Gh_Sca033106G01  94 yP 95 
                      32 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-231106IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MNDVLAALAR EAGWTVEPDG TTYRHSPPPQ HQQHLGAFSV RSGESPLSAT SLKNCSVKAT  60
LDCQQPVVRI DGSLSPASLD SVVIAERDTR SEKYPSTSPI NSVECLEADQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431461e-101AC243146.1 Gossypium hirsutum clone MX073K14-jni, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733668.13e-70PREDICTED: beta-amylase 8-like
SwissprotQ9FH806e-30BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1U8N7306e-69A0A1U8N730_GOSHI; Beta-amylase
STRINGGorai.008G218300.18e-67(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.22e-32beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]