PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca040884G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 129aa    MW: 14960.2 Da    PI: 9.9446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca040884G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-056991123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +Cgk+F  + + ++H +++
  Gh_Sca040884G01 69 FECRKCGKPFAVRGDWRTHEKNC 91
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-65489No hitNo description
Gene3DG3DSA:3.30.160.608.2E-65589IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.66989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MHMWGHGSQY RKGPESLRGT KPASSMLRLP CYCCAEGCKN NIDHPRSRPL KDFRTLQTHY  60
KRKHGAKPFE CRKCGKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRAFGDGH  120
APHTVEYCE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016674872.12e-94PREDICTED: zinc finger protein WIP6-like
RefseqXP_017617536.12e-94PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX682e-82ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0B0MWF96e-93A0A0B0MWF9_GOSAR; Protein TRANSPARENT TESTA 1-like protein
TrEMBLA0A1U8I9S96e-93A0A1U8I9S9_GOSHI; zinc finger protein WIP6-like
STRINGGorai.013G080100.11e-93(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-84C2H2-like zinc finger protein