PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca041180G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 114aa MW: 12402.6 Da PI: 6.9283

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca041180G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.4	4.3e-10	1	21	36	56
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m+v++Lt+++vkSHLQkYRl+ Gh_Sca041180G01 1 MQVDSLTNDEVKSHLQKYRLH 21 99*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-9	1	24	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MQVDSLTNDE VKSHLQKYRL HARRLPTTTT TTTPANQSGL VLGGGHAWMC QDQFGESSKG 60 SSSQSGSPQG PLQLATNTGG TSTIACESME DDEDAKFECY SWKSHVQKPR KNNV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.688	1e-168	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX964612	7e-54	JX964612.1 Gossypium hirsutum clone NBRI_TRANS-881 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681455.1	1e-81	PREDICTED: uncharacterized protein LOC107900324
Refseq	XP_016699970.1	1e-80	PREDICTED: uncharacterized protein LOC107915314
Refseq	XP_016743013.1	1e-80	PREDICTED: uncharacterized protein LOC107952257
Refseq	XP_016747070.1	1e-80	PREDICTED: uncharacterized protein LOC107955779
Swissprot	Q9FX84	1e-15	HHO6_ARATH; Transcription factor HHO6
TrEMBL	A0A1U8ITQ4	3e-80	A0A1U8ITQ4_GOSHI; uncharacterized protein LOC107900324
TrEMBL	A0A1U8KBU7	3e-79	A0A1U8KBU7_GOSHI; uncharacterized protein LOC107915314
TrEMBL	A0A1U8NY71	2e-79	A0A1U8NY71_GOSHI; uncharacterized protein LOC107952257
STRING	Gorai.001G158700.1	4e-59	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20696	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	5e-10	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]