PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca043542G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 70aa    MW: 7653.52 Da    PI: 10.4571
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca043542G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.99e-1134888128
              NAM  88 kdkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                       +++v+++ +++ vg+kk Lvf+    +g    g+ktdW+mheyrl
  Gh_Sca043542G01   3 MEESVVNRsSSRRVGIKKYLVFFigeaEGGGGGGVKTDWIMHEYRL 48 
                      5566666647888**********554444555678*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.194170IPR003441NAC domain
SuperFamilySSF1019414.18E-12556IPR003441NAC domain
PfamPF023652.5E-51348IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGMEESVVNR SSSRRVGIKK YLVFFIGEAE GGGGGGVKTD WIMHEYRLSD SDSSSGTSRS  60
SKRRGHNSKI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704485.12e-41PREDICTED: NAC domain-containing protein 104-like
TrEMBLA0A1U8KPX34e-40A0A1U8KPX3_GOSHI; NAC domain-containing protein 104-like
TrEMBLA0A2P5QJT53e-40A0A2P5QJT5_GOSBA; Uncharacterized protein
STRINGGorai.013G063500.16e-40(Gossypium raimondii)