PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca055128G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 195aa MW: 21100.6 Da PI: 10.0534

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca055128G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	62	121	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Gh_Sca055128G01 62 HHQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 121 57899*****************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-26	61	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.1E-33	64	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
IYKKMIQELL GGSSCLNFGG ERKISINGSI LEGTPTSSPS PSSSSSSATT SSTSNSSNPE 60 NHHQNLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKNKS 120 TTGVSTSLGK STSSKMKTVV SEIGRSGFDH ELQSTPILWT SAAQTSHLLS NLTSMRATLN 180 PNPNTLSNPV SIKEE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.19244	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016698668.1	1e-136	PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBL	A0A1U8KCH2	1e-134	A0A1U8KCH2_GOSHI; dof zinc finger protein DOF5.1-like
STRING	Gorai.011G104200.1	1e-110	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16000	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-35	OBF binding protein 4