PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca057409G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 93aa    MW: 9925 Da    PI: 6.4955
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca057409G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.69.8e-14226327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++lC f++r+G+Ck+G++CkF+H++
  Gh_Sca057409G01  2 EPLCIFYSRYGICKFGPSCKFNHPM 26
                     79*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.76127IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4126IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6427IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
GEPLCIFYSR YGICKFGPSC KFNHPMGVFT FNYSASSPFE APVHRLLGSS SGSGGINLSS  60
EGLVEAGSTK PRRLSLSENR QLSSSDDSID TEG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016750964.17e-58PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF91e-37ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8PL902e-56A0A1U8PL90_GOSHI; zinc finger CCCH domain-containing protein ZFN-like isoform X2
STRINGGorai.012G028600.15e-57(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-20zinc finger protein 1