PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca068518G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 86aa    MW: 9392.54 Da    PI: 10.65
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca068518G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.5e-14556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l  +v+++G+g+Wk+I r          R+  ++k++w+++
  Gh_Sca068518G01  5 KQKWTAEEEEALRAGVAKYGKGNWKLIQRDPElspflFARSNIDLKDKWRNL 56
                     79*****************************9999*978***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.901157IPR017930Myb domain
SuperFamilySSF466891.15E-16257IPR009057Homeodomain-like
SMARTSM007174.2E-8459IPR001005SANT/Myb domain
PfamPF002491.0E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-15556IPR009057Homeodomain-like
CDDcd116602.45E-20656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKYGKGNWKL IQRDPELSPF LFARSNIDLK DKWRNLSGGP  60
GGHGSREKSR ASKPKPSSDG SQGAVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.234621e-144boll
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617121.12e-57PREDICTED: telomere repeat-binding factor 4-like
SwissprotF4I7L18e-26TRB4_ARATH; Telomere repeat-binding factor 4
SwissprotQ8W1197e-26SMH4_MAIZE; Single myb histone 4
TrEMBLA0A0B0MK945e-56A0A0B0MK94_GOSAR; Histone H1
STRINGGorai.001G013000.12e-56(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-28MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]