PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca069306G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 138aa    MW: 15285.3 Da    PI: 6.7827
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca069306G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer70.72.3e-221421759
      ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                     +Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  Gh_Sca069306G01  1 MGGNAIDGCGEFMPS-GEEGTIEALNCSACNCHRNFHRKEIEG 42
                     7*************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.3E-20140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-17142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.844139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.4E-23140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-1497137IPR009057Homeodomain-like
SuperFamilySSF466892.33E-6101136IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGGNAIDGCG EFMPSGEEGT IEALNCSACN CHRNFHRKEI EGHHKSILPP EALGYPTGTL  60
IHSRAAPTPH QMIMSYNMGS LPSESDEQPE DGGGVVGSRP LQLMKKRFRT KFTQEQKEKM  120
LNFAEKVGWK IQKQEEAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.131741e-163boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016677367.14e-92PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotO647226e-45ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A1U8IGS89e-91A0A1U8IGS8_GOSHI; zinc-finger homeodomain protein 4-like
TrEMBLA0A2P5RCS04e-91A0A2P5RCS0_GOSBA; Uncharacterized protein
TrEMBLA0A2P5YLS83e-91A0A2P5YLS8_GOSBA; Uncharacterized protein
STRINGGorai.011G090900.12e-91(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-47homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]