PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca072137G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 174aa    MW: 19090.9 Da    PI: 4.635
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca072137G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS124.81e-381917082219
             GRAS  82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfA 169
                      +l  f++++P+++f++ +aN aIleaveg + +Hi+D+++++++Q p+L++a+asR egpp +++T+ g ++++       ++ee+g++L +fA
  Gh_Sca072137G01  19 ELasFVDLTPWHRFGFTAANAAILEAVEGYSVIHIVDLSLTHCMQIPTLIDAIASRLEGPPLVKLTVAGGATEDvppmLDLSYEELGSKLINFA 112
                      3345*****************************************************************99988998888899*********** PP

             GRAS 170 eelgvpfefnvl...vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvs 219
                      ++ +v +ef+++   +a+ +++l +e+Lrv++      gEal++n++++lh+l++e++s
  Gh_Sca072137G01 113 RSRNVVLEFRAIpstYADGFSSL-IEQLRVQHlvyaesGEALVINCHMMLHYLPEETLS 170
                      ************99844455555.55555555555559****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.6831174IPR005202Transcription factor GRAS
PfamPF035143.5E-3619170IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MANAHCNLSI DIHTFSVIEL ASFVDLTPWH RFGFTAANAA ILEAVEGYSV IHIVDLSLTH  60
CMQIPTLIDA IASRLEGPPL VKLTVAGGAT EDVPPMLDLS YEELGSKLIN FARSRNVVLE  120
FRAIPSTYAD GFSSLIEQLR VQHLVYAESG EALVINCHMM LHYLPEETLS PLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-1522124171275Protein SHORT-ROOT
5b3h_B4e-1522124117221Protein SHORT-ROOT
5b3h_E4e-1522124117221Protein SHORT-ROOT
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697295.11e-122PREDICTED: scarecrow-like protein 32 isoform X2
SwissprotQ9SN224e-73SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A1U8K4581e-121A0A1U8K458_GOSHI; scarecrow-like protein 32 isoform X2
STRINGGorai.007G221900.11e-122(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-75GRAS family protein