PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca073981G01
Common NameHB1
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 166aa    MW: 18939.5 Da    PI: 8.514
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca073981G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1879131456
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  Gh_Sca073981G01  79 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 131
                      4568889*********************************************9 PP
2HD-ZIP_I/II127.55.5e-4177165189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      ekk+rl+ eqvk+LE+sFe  +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aLk++++alk++n++L++++++L++
  Gh_Sca073981G01  77 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYDALKKQFEALKADNDALQAQNKKLNA 165
                      69************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1968135IPR009057Homeodomain-like
PROSITE profilePS5007116.76373133IPR001356Homeobox domain
SMARTSM003891.0E-1776137IPR001356Homeobox domain
CDDcd000861.49E-1678134No hitNo description
PfamPF000461.3E-1579131IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1981141IPR009057Homeodomain-like
PRINTSPR000314.4E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000314.4E-6113129IPR000047Helix-turn-helix motif
PfamPF021832.9E-12133166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAFPPHAFMF QPHEDHHNDH LPSPTSLNFL PSCPPQLFHG GGAPFMMKRS VSFSGVDKSE  60
EVHGDDELSD DGSHLGEKKK RLNLEQVKAL EKSFELGNKL EPERKVQLAK ALGLQPRQIA  120
IWFQNRRARW KTKQLEKDYD ALKKQFEALK ADNDALQAQN KKLNAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.186530.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1513090.0EF151309.1 Gossypium hirsutum homeobox protein (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313679.11e-119homeobox-leucine zipper protein HAT7-like
RefseqXP_017609830.11e-119PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ004662e-79HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA9PL221e-118A9PL22_GOSHI; Homeobox protein
STRINGGorai.006G022100.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.17e-82homeobox 3