PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca074205G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 103aa    MW: 11939.9 Da    PI: 10.482
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca074205G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-133879344
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     ien+s r+ ++ kRr+g+ KK  EL +LC++e  ++i+ ++ 
  Gh_Sca074205G01 38 IENSSARKASLRKRRQGLVKKVTELTTLCGVEGGIVIYTKNE 79
                     9************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.2782878IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-132887IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-1728101IPR002100Transcription factor, MADS-box
CDDcd002667.85E-1829103No hitNo description
PRINTSPR004048.8E-63050IPR002100Transcription factor, MADS-box
PfamPF003192.3E-143879IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-65065IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
KQFESKRERA LVDKQSETVK LAKLAIEMTG KKVKLAWIEN SSARKASLRK RRQGLVKKVT  60
ELTTLCGVEG GIVIYTKNEE EPIVWLSREE VERLLRRFNE IPE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5850971e-136JX585097.1 Gossypium hirsutum clone NBRI_GE18571 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609641.18e-43PREDICTED: uncharacterized protein LOC108455612
TrEMBLA0A0D2QAK34e-42A0A0D2QAK3_GOSRA; Uncharacterized protein (Fragment)
TrEMBLA0A2P5SAF41e-40A0A2P5SAF4_GOSBA; Uncharacterized protein
TrEMBLA0A2P5WXX75e-41A0A2P5WXX7_GOSBA; Uncharacterized protein
STRINGGorai.006G153400.11e-41(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.12e-11AGAMOUS-like 48