PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca074678G01
Common NameNAC8
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 118aa    MW: 13678.8 Da    PI: 10.3142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca074678G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.72.2e-44710530129
              NAM  30 leevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvm 123
                      + ++i evd++k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg lvg+kktLvfykgrapkgek++Wvm
  Gh_Sca074678G01   7 A-SAIGEVDLNKCEPWDLPKKAKMGEKQWYFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIFKGKGCLVGMKKTLVFYKGRAPKGEKSNWVM 99 
                      4.579**************99999*****************************************9**************************** PP

              NAM 124 heyrle 129
                      heyrle
  Gh_Sca074678G01 100 HEYRLE 105
                      ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.941118IPR003441NAC domain
SuperFamilySSF1019414.58E-453110IPR003441NAC domain
PfamPF023659.6E-1924104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MNSNFSASAI GEVDLNKCEP WDLPKKAKMG EKQWYFFCQR DRKYPTGMRT NRATEAGYWK  60
ATGKDKEIFK GKGCLVGMKK TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY YNLPKGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-40410443142NO APICAL MERISTEM PROTEIN
1ut4_B7e-40410443142NO APICAL MERISTEM PROTEIN
1ut7_A7e-40410443142NO APICAL MERISTEM PROTEIN
1ut7_B7e-40410443142NO APICAL MERISTEM PROTEIN
3swm_A9e-40410446145NAC domain-containing protein 19
3swm_B9e-40410446145NAC domain-containing protein 19
3swm_C9e-40410446145NAC domain-containing protein 19
3swm_D9e-40410446145NAC domain-containing protein 19
3swp_A9e-40410446145NAC domain-containing protein 19
3swp_B9e-40410446145NAC domain-containing protein 19
3swp_C9e-40410446145NAC domain-containing protein 19
3swp_D9e-40410446145NAC domain-containing protein 19
4dul_A7e-40410443142NAC domain-containing protein 19
4dul_B7e-40410443142NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.74680.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841697650.0
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141390.0JQ914139.1 Gossypium hirsutum NAC domain protein 8 (NAC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314645.12e-82NAC domain-containing protein 92-like
RefseqXP_012492652.12e-82PREDICTED: NAC domain-containing protein 100-like
RefseqXP_016672976.12e-82PREDICTED: NAC domain-containing protein 92-like
RefseqXP_017628334.12e-82PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK442e-75NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0D2SKF94e-81A0A0D2SKF9_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I4224e-81A0A1U8I422_GOSHI; NAC domain-containing protein 92-like
TrEMBLA0A2P5S4P74e-81A0A2P5S4P7_GOSBA; Uncharacterized protein
TrEMBLU5IJP44e-81U5IJP4_GOSHI; NAC domain protein 8
STRINGGorai.007G267700.16e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22692775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.16e-78Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Shah ST, et al.
    Isolation and expression profiling of GhNAC transcription factor genes in cotton (Gossypium hirsutum L.) during leaf senescence and in response to stresses.
    Gene, 2013. 531(2): p. 220-34
    [PMID:24036432]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]