PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca079468G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 193aa    MW: 21613.1 Da    PI: 6.4427
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca079468G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.98.3e-5524120197
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yrele
  Gh_Sca079468G01  24 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANEHCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLHRYRELE 117
                      69******************************************************************************************** PP

            NF-YB  95 gek 97 
                      ge+
  Gh_Sca079468G01 118 GER 120
                      *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-5119125IPR009072Histone-fold
SuperFamilySSF471131.09E-3827123IPR009072Histone-fold
PfamPF008082.7E-263094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.0E-165876No hitNo description
PRINTSPR006154.0E-167795No hitNo description
PRINTSPR006154.0E-1696114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNMRMGEANH TNSHSNSDDN ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE  60
CVSEYISFIT GEANEHCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTVYL HRYRELEGER  120
GSIRGEPVVK RVVDYGTLGV AAFAPAFHMG HHHHHGHGFF GSGAMGGYLK DESSAGSSQA  180
AVANGEPYAQ QHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A3e-6223115597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed primarily during seed development. {ECO:0000269|PubMed:12509518}.
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and developing siliques. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447021.11e-145PREDICTED: nuclear transcription factor Y subunit B-6
RefseqXP_016687892.11e-145PREDICTED: nuclear transcription factor Y subunit B-6
SwissprotQ84W664e-76NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLA0A0B0MVT11e-143A0A0B0MVT1_GOSAR; Nuclear transcription factor Y subunit B-6-like protein
TrEMBLA0A0D2TS201e-144A0A0D2TS20_GOSRA; Uncharacterized protein
TrEMBLA0A0D2UPM61e-143A0A0D2UPM6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JC471e-143A0A1U8JC47_GOSHI; nuclear transcription factor Y subunit B-6
TrEMBLA0A2P5QJQ11e-143A0A2P5QJQ1_GOSBA; Uncharacterized protein
TrEMBLA0A2P5WW471e-143A0A2P5WW47_GOSBA; Uncharacterized protein
STRINGGorai.009G184800.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98962636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.29e-70nuclear factor Y, subunit B6
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Kim HU, et al.
    Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues.
    FEBS Open Bio, 2013. 4: p. 25-32
    [PMID:24363987]
  3. Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M
    Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants.
    Mol Plant, 2017. 10(4): p. 645-648
    [PMID:27871811]
  4. Li D, et al.
    MYB89 Transcription Factor Represses Seed Oil Accumulation.
    Plant Physiol., 2017. 173(2): p. 1211-1225
    [PMID:27932421]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Han JD, et al.
    Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program.
    Front Plant Sci, 2017. 8: p. 439
    [PMID:28421087]