PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca082239G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 143aa    MW: 15694.2 Da    PI: 10.9667
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca082239G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.12.5e-1876110135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Gh_Sca082239G01  76 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 110
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.9E-1770120IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.54570106IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.1E-1571108IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.52E-1672134No hitNo description
CDDcd002021.66E-1275122No hitNo description
PfamPF003203.2E-1676110IPR000679Zinc finger, GATA-type
PROSITE patternPS00344076101IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MTVPAKARSK RSRAAPCNWA SRLLVLSPTV SSPEPDIIVP VQPLPSNQPG KKPVKTTSSS  60
SKKKDCGETS SDGRKCLHCA TDKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP  120
TFVLTKHSNS HRKVLELRRQ KEM
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5244650.0HQ524465.1 Gossypium herbaceum clone NBRI_G035 simple sequence repeat marker, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625306.12e-98PREDICTED: GATA transcription factor 12-like
SwissprotP697813e-57GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0B0NEF84e-97A0A0B0NEF8_GOSAR; GATA transcription factor
STRINGGorai.004G288400.17e-98(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-49GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]