PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca083050G01

Common Name

NAC6

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 90aa MW: 10659.4 Da PI: 10.5262

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca083050G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.7	9.8e-36	2	77	54	129
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ kg lvg+kktLvfykgrap+gekt+Wvmheyrle Gh_Sca083050G01 2 GEKEWYFFCQRDRKYPTGMRTNRATQAGYWKATGKDKEIFKGKGCLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 77 579************************************9******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.881	1	90	IPR003441	NAC domain
SuperFamily	SSF101941	1.15E-35	2	82	IPR003441	NAC domain
Pfam	PF02365	5.1E-18	6	76	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MGEKEWYFFC QRDRKYPTGM RTNRATQAGY WKATGKDKEI FKGKGCLVGM KKTLVFYKGR 60 APRGEKTNWV MHEYRLEGKF SYYNLPKAAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	2	76	69	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	2	76	69	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	2	76	69	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	2	76	69	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	2	76	72	145	NAC domain-containing protein 19
3swm_B	2e-30	2	76	72	145	NAC domain-containing protein 19
3swm_C	2e-30	2	76	72	145	NAC domain-containing protein 19
3swm_D	2e-30	2	76	72	145	NAC domain-containing protein 19
3swp_A	2e-30	2	76	72	145	NAC domain-containing protein 19
3swp_B	2e-30	2	76	72	145	NAC domain-containing protein 19
3swp_C	2e-30	2	76	72	145	NAC domain-containing protein 19
3swp_D	2e-30	2	76	72	145	NAC domain-containing protein 19
4dul_A	2e-30	2	76	69	142	NAC domain-containing protein 19
4dul_B	2e-30	2	76	69	142	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3293	1e-147	ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU706340	1e-144	EU706340.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) mRNA, complete cds.
GenBank	EU706349	1e-144	EU706349.1 Gossypium hirsutum NAC domain protein NAC6 (NAC6) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016675720.1	2e-61	PREDICTED: NAC domain-containing protein 92-like
Swissprot	Q9FK44	1e-57	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0D2VDX9	3e-60	A0A0D2VDX9_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8IBY7	6e-60	A0A1U8IBY7_GOSHI; NAC domain-containing protein 92-like
STRING	Gorai.013G118000.1	1e-60	(Gossypium raimondii)
STRING	XP_010088484.1	3e-60	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2269	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-60	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]