PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca087490G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 138aa MW: 15688 Da PI: 8.2293

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca087490G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	57.7	1.5e-18	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ien r + fskRr+gi KK +ELS+LC+ae++ iifs+ gk y + Gh_Sca087490G01 17 KIIENADDRLIAFSKRRTGIYKKISELSILCGAEILFIIFSPAGKPYSF 65 579*****************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.703	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.1E-25	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-24	10	80	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	11	31	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-21	19	65	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	31	46	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-17	46	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MASSDKKTKG KQKIEIKIIE NADDRLIAFS KRRTGIYKKI SELSILCGAE ILFIIFSPAG 60 KPYSFGHPSV ESVAKCFPNA GQHLEETIDA PVETYRKERI NLLVQDFTDV QDQLDVIKEK 120 QMEIALAQRS HGTEIRHW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681299.1	2e-93	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1U8IZC1	5e-92	A0A1U8IZC1_GOSHI; agamous-like MADS-box protein AGL62
STRING	Gorai.010G132800.1	4e-86	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	2e-23	AGAMOUS-like 57