PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca107391G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 107aa    MW: 12047 Da    PI: 4.857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca107391G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-053254123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  Gh_Sca107391G01 32 YECVFCKRGFTTAQALGGHMNIH 54
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.66E-73058No hitNo description
Gene3DG3DSA:3.30.160.601.3E-43058IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993259IPR007087Zinc finger, C2H2
PfamPF139121.4E-53256IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MESSQLEDSK SSSEDTDRSE QSNDDTGTGR SYECVFCKRG FTTAQALGGH MNIHRKDRAK  60
SSRPSSVPIV SDKFVDVDDH DNYNPRISSY PYPPIQTYHS MDPDQLP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448590.11e-73PREDICTED: transcriptional regulator SUPERMAN-like
RefseqXP_016724971.11e-73PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0D2M2V13e-72A0A0D2M2V1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8MDS63e-72A0A1U8MDS6_GOSHI; transcriptional regulator SUPERMAN-like
STRINGGorai.001G251300.14e-73(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15373717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-14C2H2 family protein