PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca114300G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family BBR-BPC
Protein Properties Length: 132aa    MW: 14595.3 Da    PI: 9.1889
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca114300G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind98.81.7e-30113032155
        GAGA_bind  32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqq.lse.pql 119
                      +aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a+ erdn++++l+++ensla    s++p+g ++++g+k++++ qq +++ p++
  Gh_Sca114300G01   1 MAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNNAIAERDNAIANLQYRENSLAsgniSSCPPGFHISRGVKHMQHPQQhVHHlPHI 94 
                      78*********************************************************9999999********************55559*** PP

        GAGA_bind 120 edsavelreeeklealpieeaaeeakekkkkkkrqr 155
                      ++ +++ re++ +++lp++  ++ea ++++ k+ ++
  Gh_Sca114300G01  95 SEVPYNSREMHASDVLPVTPGTSEAAKSRQGKRAKE 130
                      *****************9988888888777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.7E-131132IPR010409GAGA-binding transcriptional activator
SMARTSM012266.3E-51132IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAERDAAIQE RNLALSEKKA AIAERDMAFL QRDAAIAERN NAIAERDNAI ANLQYRENSL  60
ASGNISSCPP GFHISRGVKH MQHPQQHVHH LPHISEVPYN SREMHASDVL PVTPGTSEAA  120
KSRQGKRAKE AK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012465992.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012465997.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466004.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466013.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466019.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466025.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466035.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466042.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_012466050.13e-91PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_016707528.13e-91PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707529.13e-91PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707530.13e-91PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016707531.13e-91PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-43BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0D2MA326e-90A0A0D2MA32_GOSRA; Uncharacterized protein
TrEMBLA0A0D2Q5477e-90A0A0D2Q547_GOSRA; Uncharacterized protein
TrEMBLA0A1U8KYL57e-90A0A1U8KYL5_GOSHI; protein BASIC PENTACYSTEINE6-like
STRINGGorai.002G124900.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.24e-34basic pentacysteine 6