PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca115125G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 60aa MW: 6709.88 Da PI: 9.7483

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca115125G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	71	2.4e-22	2	60	28	86
DUF260 28 kkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 ++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq Gh_Sca115125G01 2 AHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQ 60 68*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.894	1	60	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-21	2	60	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MAHFAAVHKV YGASNASKML QRIPVHKRLD AVVTLCYEAL ARVRDPVYGC VGHLFTLQQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-20	4	60	40	96	LOB family transfactor Ramosa2.1
5ly0_B	3e-20	4	60	40	96	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012489773.1	4e-37	PREDICTED: LOB domain-containing protein 19
Refseq	XP_016710129.1	3e-37	PREDICTED: LOB domain-containing protein 19-like
Refseq	XP_017614887.1	3e-37	PREDICTED: LOB domain-containing protein 19-like
Swissprot	O22132	4e-30	LBD19_ARATH; LOB domain-containing protein 19
TrEMBL	A0A0B0MXZ8	8e-36	A0A0B0MXZ8_GOSAR; LOB domain-containing 19-like protein
TrEMBL	A0A0D2SGW6	9e-36	A0A0D2SGW6_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8LAF3	8e-36	A0A1U8LAF3_GOSHI; LOB domain-containing protein 19-like
TrEMBL	A0A2P5RFT1	9e-36	A0A2P5RFT1_GOSBA; Uncharacterized protein
TrEMBL	A0A2P5XPI9	8e-36	A0A2P5XPI9_GOSBA; Uncharacterized protein
STRING	Gorai.007G091600.1	1e-36	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	1e-32	LOB domain-containing protein 19