PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca116557G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 124aa    MW: 14317 Da    PI: 8.5575
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca116557G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.73.4e-1554112563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      kr rr+++NRe+ArrsR RKk++ieeL+  v +L++ N +L ++l +l ++  +  +e+
  Gh_Sca116557G01  54 KRLRRMISNRESARRSRMRKKQQIEELQSQVNQLQTINGQLSQKLINLLENNHEILQEN 112
                      9*******************************************999988888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-1650114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.55352115IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-1354110No hitNo description
PfamPF001706.9E-1354112IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.49E-1254108No hitNo description
CDDcd147026.50E-1655106No hitNo description
PROSITE patternPS0003605772IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MESWDGNSSS SQHPDSGIFS HRLSPNTQIH LFSPNPSNED EGRVCQASIV VDEKRLRRMI  60
SNRESARRSR MRKKQQIEEL QSQVNQLQTI NGQLSQKLIN LLENNHEILQ ENAQLKEKVS  120
TLHM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.242824e-44ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431140.0AC243114.1 Gossypium raimondii clone GR__Ba0041F12-jfm, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743264.15e-85PREDICTED: basic leucine zipper 43-like
RefseqXP_017645175.15e-85PREDICTED: basic leucine zipper 43-like
TrEMBLA0A1U8NZ521e-83A0A1U8NZ52_GOSHI; basic leucine zipper 43-like
TrEMBLA0A2P5YML11e-83A0A2P5YML1_GOSBA; Uncharacterized protein
STRINGGorai.008G200600.12e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.15e-21basic leucine-zipper 70