PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca133064G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 71aa MW: 8458.8 Da PI: 10.6477

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca133064G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.7e-10	30	71	2	43
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 +k+++f++eq++ Le+ Fe++ ++ +++ +LA+klgL+ rq Gh_Sca133064G01 30 KKKRRFSDEQIRLLESIFESETKLEPRKKMQLARKLGLQPRQ 71 56779**********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-11	17	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.67E-9	19	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.912	26	71	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-7	30	71	IPR001356	Homeobox domain
CDD	cd00086	1.60E-5	35	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
METEYHPAVD EAIAEQAPQI PRNKKNNKLK KKRRFSDEQI RLLESIFESE TKLEPRKKMQ 60 LARKLGLQPR Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	33	KKKRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016695089.1	2e-43	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	8e-16	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A1U8K3A9	5e-42	A0A1U8K3A9_GOSHI; homeobox-leucine zipper protein ATHB-12-like
STRING	Gorai.004G123100.1	4e-31	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-15	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]