PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca137957G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 72aa    MW: 7731.69 Da    PI: 4.8572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca137957G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS70.53.3e-22157319374
             GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +e+aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Gh_Sca137957G01   1 METAGFSPVHLGSNAYKQASMLLALFAsGDGYRVEENNGCLMLGWHTRPLIATSAWR 57 
                      899*****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.1E-19157IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
METAGFSPVH LGSNAYKQAS MLLALFASGD GYRVEENNGC LMLGWHTRPL IATSAWRLAG  60
TESGSELTQE LS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.163271e-115boll| ovule| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO291228921e-115
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0062691e-119DQ006269.1 Gossypium hirsutum GIA/RGA-like gibberellin response modulator (GAI) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667033.13e-43PREDICTED: DELLA protein GAI-like
RefseqXP_016744906.12e-43PREDICTED: DELLA protein GAI
RefseqXP_017606442.13e-43PREDICTED: DELLA protein GAI
SwissprotQ7Y1B61e-30GAI_SOLLC; DELLA protein GAI
TrEMBLA0A0D2N7E86e-42A0A0D2N7E8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8HSU36e-42A0A1U8HSU3_GOSHI; DELLA protein GAI-like
TrEMBLA0A1U8P1176e-42A0A1U8P117_GOSHI; DELLA protein GAI
TrEMBLA0A2P5YBE93e-42A0A2P5YBE9_GOSBA; Uncharacterized protein
STRINGGorai.001G089400.11e-42(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2644523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-31RGA-like 2
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]