PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca139505G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 56aa    MW: 6207.99 Da    PI: 11.9062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca139505G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.51.4e-073453222
              AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                     ++ GVr+++ +grWvAeI+d 
  Gh_Sca139505G01 34 RFVGVRQRP-SGRWVAEIKDS 53
                     689******.7********94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-63454IPR001471AP2/ERF domain
PROSITE profilePS510328.6893456IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MAGPESTTKT TTVITNTDNT TTTMAQPLTK PTRRFVGVRQ RPSGRWVAEI KDSSQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016727284.19e-31PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A1U8MNU72e-29A0A1U8MNU7_GOSHI; ethylene-responsive transcription factor ESR1-like
STRINGGorai.008G116800.12e-29(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-09related to AP2 11