PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca156698G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 70aa    MW: 8124.1 Da    PI: 5.11
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca156698G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB110.11.3e-341643598
            NF-YB 35 vqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98
                     +qecvsefisfvtseasdkc++e+rkting+d++wal tlGf+dy++pl+ yl+kyre+eg++k
  Gh_Sca156698G01  1 MQECVSEFISFVTSEASDKCRKERRKTINGEDICWALVTLGFDDYAAPLRRYLNKYREVEGDNK 64
                     79***********************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.87E-25167IPR009072Histone-fold
PRINTSPR006156.3E-19119No hitNo description
Gene3DG3DSA:1.10.20.102.2E-31168IPR009072Histone-fold
PfamPF008086.7E-14137IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE patternPS006850420IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006156.3E-192038No hitNo description
PRINTSPR006156.3E-193957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MQECVSEFIS FVTSEASDKC RKERRKTING EDICWALVTL GFDDYAAPLR RYLNKYREVE  60
GDNKAANQDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B5e-261583794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-261583794NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant, except roots. {ECO:0000269|PubMed:11867211}.
UniprotTISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5795631e-41JX579563.1 Gossypium hirsutum clone NBRI_GE11831 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453013.12e-45PREDICTED: nuclear transcription factor Y subunit B-1-like
RefseqXP_016700599.12e-45PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ67XJ21e-31NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
SwissprotQ9SLG06e-32NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A2P5RSV47e-45A0A2P5RSV4_GOSBA; Uncharacterized protein
STRINGEOY064792e-39(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.32e-34nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]