PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_Sca196164G01

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 50aa MW: 5916.97 Da PI: 10.5625

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_Sca196164G01	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	21.9	1.9e-07	2	47	328	373
GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 pl+ + +k +k ++ + ++v+ + ++++gWk+r +++ SaW Gh_Sca196164G01 2 PLNPELMKRVKERVKARYHSDFMVDVDGRWMLQGWKGRIIYASSAW 47 677889999999999999777************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	6.5E-5	2	47	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 50 aa Download sequence Send to blast
LPLNPELMKR VKERVKARYH SDFMVDVDGR WMLQGWKGRI IYASSAWIPA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22040	1e-82	ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and sepals. Expressed in siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471313.1	2e-30	PREDICTED: scarecrow-like protein 33
Refseq	XP_016665256.1	2e-30	PREDICTED: scarecrow-like protein 33
Refseq	XP_016740419.1	2e-30	PREDICTED: scarecrow-like protein 33
Refseq	XP_017638602.1	2e-30	PREDICTED: scarecrow-like protein 33
Swissprot	Q9LTI5	4e-16	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	A0A0D2QK26	4e-29	A0A0D2QK26_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8HGN8	4e-29	A0A1U8HGN8_GOSHI; scarecrow-like protein 33
TrEMBL	A0A1U8NR32	4e-29	A0A1U8NR32_GOSHI; scarecrow-like protein 33
TrEMBL	A0A2P5QIR6	4e-29	A0A2P5QIR6_GOSBA; Uncharacterized protein
TrEMBL	A0A2P5WNP7	4e-29	A0A2P5WNP7_GOSBA; Uncharacterized protein
STRING	Gorai.003G130600.1	7e-30	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-18	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]