PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_Sca232235G01
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 63aa    MW: 7193.08 Da    PI: 7.7854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_Sca232235G01genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+   +l+ +a + + ++   +W++ ar +g g+t +++k+++q++
  Gh_Sca232235G01  6 NWTPKQNKLFENALAIYDKDtpdRWHKLARAVG-GKTVEEVKLHYQNL 52
                     8********************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.015257IPR017884SANT domain
SMARTSM007178.2E-10355IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-14561IPR009057Homeodomain-like
CDDcd001672.42E-8653No hitNo description
Gene3DG3DSA:1.10.10.604.4E-6656IPR009057Homeodomain-like
PfamPF002492.5E-9652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    Send to blast
MASGSNWTPK QNKLFENALA IYDKDTPDRW HKLARAVGGK TVEEVKLHYQ NLVDDIKQIE  60
SGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-24262666RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.90551e-101boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440477.17e-41PREDICTED: protein RADIALIS-like 3
RefseqXP_016684660.17e-41PREDICTED: protein RADIALIS-like 3
RefseqXP_016752914.16e-41PREDICTED: protein RADIALIS-like 3
RefseqXP_017605578.18e-41PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B0NYJ32e-39A0A0B0NYJ3_GOSAR; DnaJ subfamily C member 2
TrEMBLA0A0D2TSD62e-39A0A0D2TSD6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8J2U32e-39A0A1U8J2U3_GOSHI; protein RADIALIS-like 3
TrEMBLA0A1U8PRM91e-39A0A1U8PRM9_GOSHI; protein RADIALIS-like 3
TrEMBLA0A2P5W7V12e-39A0A2P5W7V1_GOSBA; Uncharacterized protein
STRINGGorai.009G273300.13e-40(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-27RAD-like 6