PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G004900.1.p
Common NameGLYMA_01G004900, LOC778160
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 262aa    MW: 29084.5 Da    PI: 6.3905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G004900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W+++Ed  l+++ +++G+g +W + +++ g++R++k+c++rw++yl
  Glyma.01G004900.1.p 14 RGPWSPDEDATLKNYLEKHGTGgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                         89*********************************************97 PP
2Myb_DNA-binding41.62.8e-1371111446
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +T+eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Glyma.01G004900.1.p  71 FTEEEDKIICTLYDTIGSR-WSFIAAQLP-GRTDNDVKNHWNT 111
                          9******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.412966IPR017930Myb domain
SuperFamilySSF466891.13E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-111364IPR001005SANT/Myb domain
PfamPF002494.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-231569IPR009057Homeodomain-like
CDDcd001675.86E-91662No hitNo description
SMARTSM007173.3E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129414.54667117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2170116IPR009057Homeodomain-like
PfamPF002496.4E-1270111IPR001005SANT/Myb domain
CDDcd001674.74E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGRAPCCDKS NVKRGPWSPD EDATLKNYLE KHGTGGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPHIKLGG FTEEEDKIIC TLYDTIGSRW SFIAAQLPGR TDNDVKNHWN TKLKKKFLAG  120
NTSSTAATTS NNNVTFSNTS YSDQVKTLVL DHQKLNSADN WFDYSYNVLE LEQTPIPVPF  180
PMSQELEAFN YTAGSISCSA PPPSKEVSML SNADNHTLWF GYDHASEDDP NLLEFVLDDD  240
LLNHGFVSQD KSCSQVGPPS G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G004900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9028630.0DQ902863.1 Glycine max transcription factor MYBJ6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237467.10.0transcription factor MYBJ6
RefseqXP_025980167.10.0transcription factor MYBJ6 isoform X1
RefseqXP_028226321.10.0transcription factor MYB36-like
RefseqXP_028226331.10.0transcription factor MYB36-like
TrEMBLA0A0B2RM240.0A0A0B2RM24_GLYSO; Transcription factor MYB36
TrEMBLQ09GS30.0Q09GS3_SOYBN; Transcription factor MYBJ6
STRINGGLYMA01G00805.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.16e-71myb domain protein 68