PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G005500.4.p
Common NameGLYMA_01G005500, LOC100795246
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 452aa    MW: 50981.9 Da    PI: 7.1335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G005500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.65e-36471891128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  Glyma.01G005500.4.p  47 LPAGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnec 134
                          799************.99*********5553344444434666646**********.555666799******************845555 PP

                  NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Glyma.01G005500.4.p 135 dlqGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                          54433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-3843208IPR003441NAC domain
PROSITE profilePS5100533.08247208IPR003441NAC domain
PfamPF023653.0E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSKISNLSSV SSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTGEGSGEP NNSGRRDSGS  240
GSCSSKEIVT HRDEMSAVVG VPPMTSFTHH HPLDIQQLKP DHFSFIPFRK SFDERMQVGI  300
GEASTAREVM QASGSCEEVH ERHLAQVTPH HHQLQQHAHH HQISNSAFHI SRPSHPISTI  360
ISPPPLHHTS IILDDNSYHV SRIMLQNENF QQQQQQHHKL GGRSASGLEE LIMGCTSTEI  420
KEESSITNAQ EAEWLKYSSY WPDPDNQDHH G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G005500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006572925.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_006572927.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_006572928.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_014619824.10.0NAC domain-containing protein 75 isoform X1
RefseqXP_028226411.10.0NAC domain-containing protein 75-like isoform X1
RefseqXP_028226419.10.0NAC domain-containing protein 75-like isoform X1
RefseqXP_028226426.10.0NAC domain-containing protein 75-like isoform X1
TrEMBLI1J4G00.0I1J4G0_SOYBN; Uncharacterized protein
STRINGGLYMA01G00880.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-123NAC domain containing protein 99