PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G013600.1.p
Common NameGLYMA_01G013600, LOC100101882
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 416aa    MW: 44338.6 Da    PI: 6.3589
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G013600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.62e-21310372163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++  +++l se+
  Glyma.01G013600.1.p 310 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLVSEN 372
                          89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.2E-27199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.3E-57138277No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-17303369No hitNo description
PfamPF001701.0E-19310372IPR004827Basic-leucine zipper domain
SMARTSM003384.3E-22310374IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.242312375IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-11313369No hitNo description
CDDcd147029.75E-24315365No hitNo description
PROSITE patternPS000360317332IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGSSEMDKTP KEKESKTPPP PPTSQEQSST TSTGTINPEW PGFQAYSPIP PHGFLASNPQ  60
AHPYMWGVQQ QFMPPYGTPP HPYVAMYPPG GIYAHPSMPP GSYPFSPFAM PSPNGIAEAS  120
GNTPGSMEAD GKPPEVKEKL PIKRSKGSLG SLNMITGKNN EHGKTPGTSA NGIHSKSGES  180
ASEGEGTSEG SDANSQNDSQ LKSGGRQDSF EDEPSQNGSL AYTAQNGGLN TPHTVVNQTM  240
SIIPISAGGA PGAVPGPTTN LNIGMDYWGT PASSNIPALG RKVPSTAVAG GMVTVGSRDS  300
AQSQLWLQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEALKEE NASLRSEVNR  360
IRSDYEQLVS ENSALKERLG ELPANDDHHR SCRNDQHVGN DTQQSGQTEA MPGGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326332RRSRLRK
2326333RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218320.0leaf| pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G013600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697910.0AF369791.1 Phaseolus vulgaris bZIP transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006572954.10.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-161BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0R0LBM00.0A0A0R0LBM0_SOYBN; Uncharacterized protein
STRINGGLYMA01G01740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-138basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]