PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G020500.2.p
Common NameGLYMA_01G020500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 22151.5 Da    PI: 9.7803
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G020500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.2e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+n++ rqvtfskRr+g++KKA+EL +LCda+v ++ifsstgklyey+s
  Glyma.01G020500.2.p  9 ERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYAS 59
                         69***********************************************86 PP
2K-box73.37.1e-2580170898
                K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           + e++ + +q+e++ L+++++nLq+++R+l+Ge+L  Ls+++Lq Le+qLe  l+ +R kK+++l+++i+el +k + + +en +L kk
  Glyma.01G020500.2.p  80 MNPESEVKFWQREAEILRQQLQNLQENHRQLMGEQLYGLSVRNLQDLENQLELNLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKK 169
                          367999*********************************************************************************999 PP

                K-box  98 l 98 
                          +
  Glyma.01G020500.2.p 170 V 170
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.992161IPR002100Transcription factor, MADS-box
CDDcd002651.03E-42277No hitNo description
SuperFamilySSF554551.83E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2382170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.09486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYAST  60
SMKSIIERYN TCKEEHHRQM NPESEVKFWQ REAEILRQQL QNLQENHRQL MGEQLYGLSV  120
RNLQDLENQL ELNLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV NLIHQEHTQL  180
CKKLAQIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-23183183MEF2C
5f28_B8e-23183183MEF2C
5f28_C8e-23183183MEF2C
5f28_D8e-23183183MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G020500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517221.11e-120MADS-box transcription factor 23
RefseqXP_028228189.11e-120MADS-box transcription factor 23-like
SwissprotQ6EP499e-93MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0R0LEE61e-133A0A0R0LEE6_SOYBN; Uncharacterized protein
STRINGGLYMA01G02525.11e-120(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-86AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]