PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G025000.1.p

Common Name

GLYMA_01G025000, LOC100795063

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 255aa MW: 27499.7 Da PI: 7.1075

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G025000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.4	1.1e-30	47	102	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +Ggha+DGCgEfm++ g egt +alkCaAC CHRnFHR+e ++ Glyma.01G025000.1.p 47 RARYRECLKNHAVGIGGHALDGCGEFMAA-GMEGTLDALKCAACSCHRNFHRKEADS 102 789***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.9E-28	48	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-22	49	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-28	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.979	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.2E-30	177	246	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.77E-17	179	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.6E-25	188	244	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEFEDQEEQE EELCMGGGAG YDPTQMKIPV AAEPVRSSSS NGGGCGRARY RECLKNHAVG 60 IGGHALDGCG EFMAAGMEGT LDALKCAACS CHRNFHRKEA DSSAVVSLSG GDPYFLPHHH 120 HHHHPPPPQF SGYYRHPAGY LHMGGQLRSA VGGTLALPST SGGGGTQSTR EDQEDISNNP 180 SAGGTGSKKR FRTKFTVEQK DKMLELAEKL GWRIQKHDEA VVQAFCDETG VKRHVLKVWM 240 HNNKHTLVCY NGGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-26	187	246	16	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23723	0.0	cotyledon

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G025000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006573021.1	0.0	zinc-finger homeodomain protein 1 isoform X2
Refseq	XP_028228760.1	0.0	zinc-finger homeodomain protein 1-like
Swissprot	Q6YXH5	5e-76	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A445LXX1	0.0	A0A445LXX1_GLYSO; Zinc-finger homeodomain protein 1
TrEMBL	I1J527	0.0	I1J527_SOYBN; Uncharacterized protein
STRING	GLYMA01G03060.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.01G025000.1.p
Entrez Gene	100795063

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]