PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G034500.2.p
Common NameGLYMA_01G034500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 76aa    MW: 8737.09 Da    PI: 6.2305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G034500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-063153123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+++F +ks L+ H   H
  Glyma.01G034500.2.p 31 HVCEVCKRVFENKSALNGHSAIH 53
                         79*****************8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-53055No hitNo description
Gene3DG3DSA:3.30.160.602.7E-43153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.3693153IPR007087Zinc finger, C2H2
SMARTSM003550.00813153IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MERPLTSEKD ETQIIELAWF LMSSSLTQCI HVCEVCKRVF ENKSALNGHS AIHKWAIDFE  60
LMVYKCAERG KVYDQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G034500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445LYF52e-49A0A445LYF5_GLYSO; Uncharacterized protein
TrEMBLK7K1K42e-49K7K1K4_SOYBN; Uncharacterized protein
STRINGGLYMA01G04114.13e-49(Glycine max)